Thomas R. Aunins, Keesha E. Erickson, Anushree Chatterjee* (2020). Transcriptome-based design of antisense inhibitors re-sensitizes CRE E. coli to carbapenems. Proceedings of the National Academy of Sciences (In press).
Thomas R. Aunins, Kristen A. Eller, Colleen M. Courtney, Max Levy, Samuel M. Goodman, Prashant Nagpal, and, Anushree Chatterjee* (2019).
Isolating the Escherichia coli transcriptomic response to superoxide generation from cadmium chalcogenide quantum dots. ACS Biomaterials Science and Engineering 5(9), 4206-4218.
Peter B. Otoupal, William T. Cordell, Vismaya Bachu, Madeleine J. Sitton and Anushree Chatterjee* (2018).
Multiplexed deactivated CRISPR-Cas9 gene expression perturbations deter bacterial adaptation by inducing negative epistasis. Nature Communications Biology 1:129. doi:
10.1038/s42003-018-0135-2 Thomas R. Aunins, Katherine A. Marsh, Gitanjali Subramanya, Susan L. Uprichard, Alan S. Perelson, and Anushree Chatterjee* (2018).
Intracellular hepatitis C modeling predicts infection dynamics and viral protein mechanisms. Journal of Virology 92(11) e02098-17. doi:
10.1128/JVI.02098-17 Thomas R. Aunins, Keesha E. Erickson, Nripesh Prasad, Shawn E. Levy, Angela Jones, Shristi Shrestha, Rick Mastracchio, Louis Stodieck, David Klaus, Luis Zea*, Anushree Chatterjee* (2018).
Spaceflight modifies Escherichia coli gene expression in response to antibiotic exposure and reveals role of oxidative stress. Frontiers in Microbiology 9:310. doi:
10.3389/fmicb.2018.00310 Keesha E. Erickson, James D. Winkler, Danh T. Nguyen, Ryan T. Gill, and Anushree Chatterjee* (2017).
The Tolerome: A database of transcriptome-level contributions to diverse Escherichia coli resistance and tolerance phenotypes. ACS Synthetic Biology 6 (12), pp 2302–2315
. DOI:
10.1021/acssynbio.7b00235.
Link to database.
Keesha E. Erickson, Peter B. Otoupal, and Anushree Chatterjee* (2017).
Transcriptome level signatures in gene expression and gene expression variability during bacterial adaptive evolution. mSphere 2:e00009-17.
DOI: 10.1128/mSphere.00009-17 Peter B. Otoupal, Keesha E. Erickson, Antoni E. Bordoy, and Anushree Chatterjee* (2017). "
CRISPR perturbation of gene expression alters bacterial fitness under stress and reveals underlying epistatic constraints." ACS Synthetic Biology 6 (1), pp 94–107. DOI:
10.1021/acssynbio.6b00050.
Colleen M. Courtney, Samuel Goodman, Toni Nagy, Max Levy, Pallavi Bhusal, Nancy E. Madinger, Corrella Detweiler, Prashant Nagpal*, and Anushree Chatterjee* (2017).
Potentiating clinical drug resistant bacteria via stimuli-activated superoxide generation. Science Advances 3:e1701776
. DOI: 10.1126/sciadv.1701776 Colleen M. Courtney#, Samuel Goodman#, Jessica Mc Daniel, Nancy Madinder, Anushree Chatterjee*, and Prashant Nagpal* (2016). "
Photoexcited Quantum Dots for Killing Multi-Drug Resistant Bacteria." Nature Materials 15, 529-534.
DOI: 10.1038/nmat4542 (
Link)